I am not sure that a thread such as this can do justice to the ideas involved.
I got really interested in Zoology ( 1969 ) which I was doing to change course at uni. because of the comparative anatomy bit
Kidneys - start at a one cell animal - and it is organelles ( reverse pinocytosis ) - as you get more cells in the animals, flame cells I think and then they have to aggregate as diffusion wont do ...and then jump to pronephros, mesonephros and metanephros...
similarly with eyes/vision - is it jellyfish have a sensitiv light spot ? insect eye and mammalian eye.
Even Darwin said - once the (evolutionary) development of the mammalian eye has been worked out, it will prove evolution
Religionists say: the eye is so complex it musthave been designed by ... God !
Big shock a few years ago - a gene or protein they thought developed lately and was characteristic of mammalian eye was found in insects. When I was doing Zoo the standard view was that their development was completely separate
Evolution itself has undergone change - sorry evolutionary theory has undergone change. Punctate evolution seems to be the case - evolution doesnt creep around but has sudden bursts - which was invented by Niles ( yup that crazy guy ) and Steven Jay Gould - and they thought it was so different to Darwin that it should be given its own name (!) yeah well...
Niles and Gould are now dead and Darwin marches on.
Gould wrote the Structure of Evolutionary Theory which is now a set book at uni. ( " evo-devo" ) [ evolutionary development ] and if you wanna read a thousand pages of " me me me I'm right ! I'm right ! " then go ahead. I reapply myself to my copy every few years but neva got pass page 400
sexual reproduction - see here
http://www.britannica.com/EBchecked/topic/498588/reproductive-behaviour