Actually, the answer is much simpler...
The engines themselves are never in synchronization... meaning the revolutions of the crank shaft could never be in unison. However, the propellers (regardless of type of engine even turbine powered propeller driven ones) are easily controlled from the flight deck.
The pilot can remove the "beat" one sometimes hears manually by moving one of the prop control levesr very slightly forward or aft, which changes the "pitch" or angle of the propeller blades and, correspondingly changes how fast the blades are actually turning. He listens to the sound and "syncs up" the props until there's a smooth sound and no beat...
This can be done automatically if the aircraft is so equipped...