There is absolutely nothing scientific about the idea of human extinction. Scientists are obviously just as capable of jumping onto bandwagons as the rest of us. :)
The human race has managed to live through multiple ice ages lasting 100,000 years at a time. The warmer interglacial period we find ourselves in now typically lasts only around 15,000-20,000 years. Humans are a very resilient species. It would take some over-the-top sci-fi movie style cataclysm intentionally carried out by some megalomaniac evil genius to have a chance of wiping ourselves out. It isn't gonna happen.
The fossil fuel theory is probably wrong anyway. Oil and gas may well be renewable natural resources continually produced under the earth. Saturn's moon Titan is full of hydrocarbons and I seriously doubt they came from dead creatures:
http://www.nasa.gov/mission_pages/cassini/media/cassini-20080213.html
Used-up oil reserves have been naturally refilling themselves. We are not gonna run out of "fossil" fuels any time soon, if at all. We may have to cut down out usage but i personally am not pessimistic enough to think we can't do that without killing ourselves.
The earth itself is just as resilient as we are. There is no danger of "ecological collapse". The earth is perfectly capable of supporting the 11 billion humans our population is expected to peak at:
http://blogs.spectator.co.uk/coffeehouse/2013/11/hans-rosling-dont-panic-theres-no-population-bomb/?oo=0
^ now that was a refreshingly sensible documentary! :)