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Yes LazyGun, I'm with you on this! My friend (he's actually a chemical engineer but with big expertise in geology) is now as perplexed as I am as are two of his PhD colleagues. Theoretically the inclusions simply should not be there. The only possibility is that they are, or the crystal is, something different. I now find out that the crystals were, allegedly, picked up in Peru - the vendor asserts they are not synthetically produced crystals, which crossed my mind. Of the four that I bought, one has normal dirty inclusions, two are clean, one has these "seeds".
I intend referring them to the Natural History Museum. I'll post any answer I might get (eventually, probably).
Thank you everyone!