But microwaving coffee completely mucks about with the aromatic oils that make the flavours - even in instant brew. Thats why gold or bleach free filter papers (if you filter brew the coffee) are recommended, not just using any old paper as this imparts a flavour to the brew as well, so make sure the cafetiere filter is cleaned of old coffee grounds as this will spoil the taste too...
And coffee stored in a fridge next to last nights curry will pick up unwanted flavors too...
There has been a m/wave coffee blend developed to save another 3 seconds of someones life who can't wait for water to get hot, but coffee should not be brewed over long periods nor ideally over 90C anyway as the taste of coffee comes from the volatile oil components, and over heating mucks this up, which a m/wave can do easily.
Plus you get into all sorts of arguments about chemical composition, solids, fibre content - and that old problem of dicaffeoylquinic acids!
Coffee-heads get all testy about always using fresh water, not over heating water, using specific blends for specific occasions, altering strengths of roast, prefering Jamaica Blue Mountain over AA Arabica or whatever, etc, but why not just make a fesh pot..
As above post, no such thing as a microwave lying about after cooking. M/wave ovens heat food in exactly the same way as anormal oven - by creating heat in the moisture in the product. You get more microwave exposure from driving past a radio mast or even watching TV than from an oven...