Well naturally I think it is a question. You described the Star Trek option as "...an ideal solution and everybody wins; the atheist/scientists can stop bending over backwards trying to come up with preposterous dodgy science..."
By implication, therefore, the "Star Trek option" is not dodgy science, or at least is less dodgy. This, however, despite the fact that there is no firm corroborating evidence (though there may be some hints of a sort), nor is it clear that there ever will be, nor is it clear how you can test such an idea. On such ground I think it's fair to say that it is certainly no more scientific than any other theory and probably rather a lot less in fact. Furthermore it only solves the problem about the origin of life here, and not in the Universe as a whole. That still, therefore, leaves open the question of how it started anywhere in the first place -- and the answer to that is likely to lie in chemical processes that are in some way a lot easier than it might seem. In that case, the most scientific approach is to try and replicate or investigate how those processes might have occurred.
We would still be left with the three main options: from space, possibly deliberately, or just here on its own. But the first self-replicating molecules presumably spontaneously occurred somewhere, and aliens or not that is a process that we should still try to investigate. In the Star Trek option, the story cannot end there.